Modular example using a logistic growth function

Summary

The goal of this example is to demonstrate how to setup a modular TMB model. This example replicates the standalone logisticGrowth example in this repository using a modular framework.

File Structure Overview

The logisticGrowth modular example uses the following file structure:

1. Common.hpp

• Sets up pre-processing macros
• Includes all header statements
• Sets up data and parameter type structures

2. likelihoods.hpp

• Defines lognormal distribution

3. model.hpp: Sets up logisticGrowth C++ templated class

4. DerivedQuantities.hpp -Example of including functions that calculate derived quantities

5. logisticGrowth.cpp: TMB interface with model.hpp

6. logisticGrowth.tpl: ADMB interface with model.hpp

7. modular_demo.R: I/O R Interface